Matthew B. Sullivan

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Disruption of the spinal cord-gut axis alters microbial dynamics and carbohydrate cross-feeding in the gut

  Communications Biology · 2026-06-10

• Machine learning enables scalable and systematic hierarchical virus taxonomy

  Nature Biotechnology · 2025-12-19 · 11 citations

• Population ecology and biogeochemical implications of ssDNA and dsDNA viruses along a permafrost thaw gradient

  Nature Communications · 2025-12-11 · 2 citations

• Seasonal enhancement of the viral shunt catalyzes a subsurface oxygen maximum in the Sargasso Sea

  Nature Communications · 2025-12-06 · 2 citations

• Phage resistance mutations in a marine bacterium impact biogeochemically relevant cellular processes

  Nature Microbiology · 2025-12-04 · 3 citations

• STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

  Nature Microbiology · 2025-12-01 · 6 citations

• Benchmarking with synthetic communities provides a baseline for virus-host inferences from Hi-C proximity linking

  PLoS Biology · 2025-11-20 · 1 citations

• Scalable and systematic hierarchical virus taxonomy with vConTACT3Preprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-06 · 4 citations

• Sub-daily Bermuda Atlantic Time Series virus sampling reveals taxonomy, host, and functional differences at the population, but not community levelPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-20

• CLAE: A High‐Fidelity Nanopore Sequencing Strategy for Read‐Level Viral Variant Detection and Environmental RNA Virus Discovery

  Advanced Science · 2025-09-11 · 4 citations

• Observations of coral reproduction (Acropora and Pocillopora spp.) in Rarotonga, Cook Islands

  Coral Reefs · 2025-09-01

• Precision Prediction of Microbial Ecosystem Impact on Host Metabolism Using Genome-Resolved MetagenomicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-27 · 1 citations

• Virocell resource manipulation under nutrient limitation

  mSystems · 2025-06-24 · 3 citations

• Hidden viral players: Diversity and ecological roles of viruses in groundwater microbiomesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-30

• Disruption of The Spinal Cord-Gut Axis Alters Gut Microbial Dynamics and Carbohydrate Cross-feedingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-28 · 2 citations

• Microbiome data management in action workshop: Atlanta, GA, USA, June 12–13, 2024

  Environmental Microbiome · 2025-04-19 · 4 citations

• Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics

  Plant Cell & Environment · 2025-03-19 · 2 citations

• A framework for integrating genomics, microbial traits, and ecosystem biogeochemistry

  Nature Communications · 2025-03-04 · 30 citations

• Infection and Genomic Properties of Single- and Double-Stranded DNA Cellulophaga Phages

  Viruses · 2025-03-03 · 5 citations

• Isolation and characterization of 24 phages infecting the plant growth-promoting rhizobacterium Klebsiella sp. M5al

  PLoS ONE · 2025-02-21 · 6 citations