Matthew W. Hahn

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Linking genotype to longevity under genealogical discordance in <i>Sebastes</i> rockfishes

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-30

• Ancestry-specific performance of variant effect predictors in clinical variant classification

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-17

• Distribution of Gene Tree Topologies with Duplication, Loss, and Coalescence

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-01-22 · 2 citations

• No molecular evidence for Muller’s ratchet in mitochondrial genomes

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-16

• Reconsidering cytonuclear discordance in the genomic age

  Evolution · 2025-10-07 · 4 citations

• Estimating the rate of quantitative trait evolution in the presence of gene tree discordance by calculating likelihoods across treesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-06

• Inconsistency of parsimony under the multispecies coalescent

  Theoretical Population Biology · 2025-09-27 · 1 citations

• Low mutation rate but high male-bias in the germline of a short-lived opossum

  Genetics · 2025-09-01 · 1 citations

• How sex shapes transcriptome evolution in the songbird brainPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-21 · 1 citations

• Genome‐Wide Adaptation to a Complex Environmental Gradient in a Keystone Phytoplankton Species

  Molecular Ecology · 2025-06-10 · 5 citations

• Estimating recombination using only the allele frequency spectrum

  Genetics · 2025-06-05 · 2 citations

• Optische Emissions Spektroskopie (OES) zur Differenzierung von malignem und benignem Brustgewebe

  Senologie - Zeitschrift für Mammadiagnostik und -therapie · 2025-06-01

• Repeated behavioural evolution is associated with convergence of gene expression in cavity-nesting songbirds

  Nature Ecology & Evolution · 2025-04-28 · 9 citations

• IQ-TREE 3: Phylogenomic Inference Software using Complex Evolutionary ModelsPreprint

  Molecular Biology and Evolution · 2025-04-07 · 332 citations

• A haplotype‐resolved reference genome of <i>Quercus alba</i> sheds light on the evolutionary history of oaks

  New Phytologist · 2025-02-11 · 11 citations

• Unprecedented female mutation bias in the aye-aye, a highly unusual lemur from Madagascar

  PLoS Biology · 2025-02-07 · 6 citations

• Estimating recombination using only the allele frequency spectrumPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-06 · 4 citations

• Ecological and anthropogenic effects on the genomic diversity of lemurs in Madagascar

  Nature Ecology & Evolution · 2024-12-27 · 11 citations

• Unprecedented female mutation bias in aye-ayesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-12-17

• Using gene trees with lineage-specific duplicates for phylogenetic inference mitigates the effects of long-branch attractionPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-12-12 · 2 citations