Mihaela Pertea

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Assembly and quantification of transcripts from noisy long reads with NIFFLR

  F1000Research · 2025-12-03

• OpenSpliceAI provides an efficient modular implementation of SpliceAI enabling easy retraining across nonhuman species

  eLife · 2025-10-30 · 1 citations

• Author response: OpenSpliceAI provides an efficient modular implementation of SpliceAI enabling easy retraining across nonhuman species

  2025-10-30

• Comprehensive Transcriptome Annotation of Thousands of HIV-1 GenomesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-26

• Author response: OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human species

  2025-09-09

• OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human speciesPreprint

  eLife · 2025-09-09

• Translon: a single term for translated regions

  Nature Methods · 2025-09-01 · 14 citations

• Enhancing transcriptome expression quantification through accurate assignment of long RNA sequencing reads with TranSigner

  Genome biology · 2025-08-28 · 1 citations

• OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human speciesPreprint

  eLife · 2025-07-22 · 2 citations

• OpenSpliceAI provides an efficient modular implementation of SpliceAI enabling easy retraining across nonhuman species

  eLife · 2025-07-22 · 3 citations

• Author response: OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human species

  2025-07-22

• Assembly and quantification of transcripts from noisy long reads with NIFFLRPreprint

  F1000Research · 2025-06-20

• StringTie3 Improves Total RNA-seq Assembly by Resolving Nascent and Mature TranscriptsPreprint

  Nature Methods · 2025-05-26 · 8 citations

• Efficient evidence-based genome annotation with EviAnnPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-12 · 9 citations

• Isoswitching in human brain development and agingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-09

• OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human speciesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-03-23

• Combining DNA and protein alignments to improve genome annotation with LiftOn

  Genome Research · 2024-12-27 · 20 citations

• Splam: a deep-learning-based splice site predictor that improves spliced alignments

  Genome biology · 2024-09-16 · 20 citations