Miten Jain

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Haplotype-resolved DNA methylation at the APOE locus identifies allele-specific epigenetic signatures relevant to Alzheimer’s disease risk

  npj Dementia · 2026-06-19

• Integrating mass spectrometry with Nanopore direct RNA sequencing for <i>de novo</i> modification profiling of bacteriophage MS2

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-02

• Assessment of nanopore RNA modification calling in human cell lines and synthetic systems

  Genome biology · 2026-05-07 · 2 citations

• Assessment of nanopore RNA modification calling in human cell lines and synthetic systems

  Figshare · 2026-05-07

• Additional file 2 of Assessment of nanopore RNA modification calling in human cell lines and synthetic systems

  Figshare · 2026-05-07

• Additional file 2 of Assessment of nanopore RNA modification calling in human cell lines and synthetic systems

  Figshare · 2026-05-07

• Additional file 1 of Assessment of nanopore RNA modification calling in human cell lines and synthetic systems

  Figshare · 2026-05-07

• Assessment of nanopore RNA modification calling in human cell lines and synthetic systems

  Figshare · 2026-05-07

• Additional file 1 of Assessment of nanopore RNA modification calling in human cell lines and synthetic systems

  Figshare · 2026-05-07

• A complete human pancreatic cancer genome

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-06 · 1 citations

• Pseudouridylation landscape across 42 <i>S. cerevisiae</i> cytosolic tRNA isoacceptors via Nanopore direct RNA sequencing

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-01

• Cytoplasmic localization of pseudouridine synthase 7 facilitates a pseudouridine-dependent enhancement of cellular stress tolerance

  Nature Communications · 2026-04-17 · 3 citations

• Multimodal profiling reveals cell type-specific pseudouridine modification and density-dependent translational regulation

  Nucleic Acids Research · 2026-04-08 · 1 citations

• CurrentView: a tool for visualization and comparison of nanopore ionic current signals

  Bioinformatics · 2026-04-01 · 2 citations

• The diploid reference genome of a human embryonic stem cell line

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-30 · 1 citations

• P575: Scalable, routine, long read genome sequencing of undiagnosed rare disease samples*

  Genetics in Medicine Open · 2026-01-01

• P583: Exploring the unknown: Resolving undiagnosed rare disease cases using long-read genome sequencing and epigenetics

  Genetics in Medicine Open · 2026-01-01

• P385: Long-read genome sequencing determines phasing and methylation status of two de novo variants in PTPN11 in newborn with hypertrophic cardiomyopathy

  Genetics in Medicine Open · 2026-01-01

• tRNA isodecoder analysis using Nanopore ionic current signals and deep learning

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-28 · 2 citations

• Clair3-RNA: a deep learning-based small variant caller for long-read RNA sequencing data

  Nature Communications · 2025-12-22 · 4 citations