Nikos C. Kyrpides

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Asymmetric divergence of genome organization and transcription beyond LUCA

  Biosystems · 2026-04-21

• Author Correction: A global soil plasmidome resource unveils functional and ecological roles of plasmids in soil microbiomes

  Nature Communications · 2026-04-21

• Quadrupling the protein family space with global metagenomics

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-23

• Draft genome sequence of <i>Muricoccus roseus</i> DSM 14916 ^T , isolated from a children’s care center in Finland

  Microbiology Resource Announcements · 2025-11-26

• A global soil plasmidome resource unveils functional and ecological roles of plasmids in soil microbiomes

  Nature Communications · 2025-11-18

• A genomic atlas of the human gut virome elucidates genetic factors shaping host interactionsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-02 · 13 citations

• Meta-virus resource (MetaVR): expanding the frontiers of viral diversity with 24 million uncultivated virus genomes

  Nucleic Acids Research · 2025-10-29 · 9 citations

• High-quality draft genome sequence of <i>Thermobifida halotolerans</i> DSM 44931

  Microbiology Resource Announcements · 2025-08-20

• metagRoot: a comprehensive database of protein families associated with plant root microbiomes

  Nucleic Acids Research · 2025-08-16 · 3 citations

• nf-core/proteinfamilies: A scalable pipeline for the generation of protein familiesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-16

• Draft genome sequences of two bacterial type strains isolated from a methanogenic bioreactor: <i>Ruminiclostridium sufflavum</i> DSM 19573 ^T and <i>Anaerosphaera aminiphila</i> DSM 21120 ^T

  Microbiology Resource Announcements · 2025-07-31

• Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomes

  mSystems · 2025-07-08

• Planetary-scale metagenomic search reveals new patterns of CRISPR targetingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-12 · 7 citations

• A genomic catalog of Earth’s bacterial and archaeal symbiontsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-29 · 5 citations

• metagRoot: A comprehensive database of protein families associated with plant root microbiomesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-27

• Unlocking the potential of designed microbial consortia: A breakthrough for sustainable waste management and climate resilience

  Environmental Science and Ecotechnology · 2025-03-29 · 7 citations

• Size-fractionated metagenomic depth profiles from two sulfidic stations in the Chesapeake Bay

  Microbiology Resource Announcements · 2025-03-25

• Global Archaeal Diversity Revealed Through Massive Data Integration: Uncovering Just Tip of Iceberg

  Microorganisms · 2025-03-05 · 2 citations

• Unveiling Hidden Microbial Diversity in Mars 2020 Mission Assembly Cleanrooms with Molecular Insights into the Persistent and Perseverance of Novel Species Defying Metagenome SequencingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-01-24 · 2 citations

• Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-01-21 · 1 citations