Paul C. Blainey

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Data Associated With: A one-week automated genome-wide optical pooled screen using OttoSeq

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-13

• Data Associated With: A one-week automated genome-wide optical pooled screen using OttoSeq

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-13

• Accurate strand-specific long-read transcript isoform discovery and quantification at bulk, single-cell, and single-nucleus resolution

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-12

• A multimodal atlas of COVID-19 severity identifies hallmarks of dysregulated immunityPreprint

  medRxiv · 2025-09-21

• Deep mapping of the TCR-antigen interface using pMHC-pseudotyped viruses and yeast displayPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-27 · 2 citations

• Bacterial peptide deformylase inhibitors induce prophages in competitorsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-06 · 3 citations

• Brieflow: An Integrated Computational Pipeline for High-Throughput Analysis of Optical Pooled Screening DataPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-27 · 2 citations

• Catalase activity deficiency sensitizes multidrug-resistant Mycobacterium tuberculosis to the ATP synthase inhibitor bedaquiline

  Nature Communications · 2024-11-13 · 19 citations

• Scalable, compressed phenotypic screening using pooled perturbations

  Nature Biotechnology · 2024-10-07 · 17 citations