Peter F. Stadler

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Extension of partial atom-to-atom maps: uniqueness and algorithms

  Algorithms for Molecular Biology · 2026-06-19

• Stoichiometric recipes for periodic oscillations in reaction networks

  Proceedings of the Royal Society A Mathematical Physical and Engineering Sciences · 2026-06-15 · 2 citations

• A little feat in translation: miniaturized tRNAs in nematode and arachnid mitochondria

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-13

• Octopamine receptors at a glance: from expression and anatomical maps to their role in development and behavior in the <i>Drosophila melanogaster</i> larva

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-08

• Enumeration of Autocatalytic Subsystems in Large Chemical Reaction Networks

  Journal of Chemical Theory and Computation · 2026-05-04

• BioAutoML-FAST: an automated machine-learning platform for reusable and benchmarked biological sequence models

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-22

• Machine learning-based survival prediction in colorectal cancer combining clinical and biological features

  Oncotarget · 2025-12-15 · 1 citations

• <tt>SynKit</tt> : A Graph-Based Python Framework for Rule-Based Reaction Modeling and Analysis

  Journal of Chemical Information and Modeling · 2025-12-03 · 1 citations

• Proposal NFDI4Chem 2025-2030 In the National Research Data Infrastructure (NFDI) — Our Vision: All Chemists Publish FAIR Data

  Research Ideas and Outcomes · 2025-11-26

• SynCat: molecule-level attention graph neural network for precise reaction classification

  Digital Discovery · 2025-11-06 · 1 citations

• Characterizations of undirected 2-quasi best match graphsPreprint

  ArXiv.org · 2025-11-05

• ProQSAR: A Modular and Reproducible Framework for Small-Data QSAR Modeling with Fit-and-Use Models

  Journal of Cheminformatics · 2025-11-04

• TRAMbio: a flexible python package for graph rigidity analysis of macromolecules

  BMC Bioinformatics · 2025-10-28

• Author response for "&lt;b&gt;SynCat&lt;/b&gt; : Molecule-Level Attention Graph Neural Network for Precise Reaction Classification"

  2025-10-21

• Prime Implicant Explanations for Reaction Feasibility PredictionPreprint

  ArXiv.org · 2025-10-10

• Assembly in Directed Hypergraphs

  Proceedings of the Royal Society A Mathematical Physical and Engineering Sciences · 2025-10-01 · 2 citations

• Democratising Artificial Intelligence for Pandemic Preparedness and Global Governance in Latin American and Caribbean Countries

  Microbial Biotechnology · 2025-10-01

• A short note on relevant cuts

  The Art of Discrete and Applied Mathematics · 2025-09-30 · 1 citations

• <tt>KGG</tt> : Knowledge-Guided Graph Self-Supervised Learning to Enhance Molecular Property Predictions

  Journal of Chemical Information and Modeling · 2025-09-08 · 8 citations

• Rule-Based Gillespie Simulation of Chemical SystemsPreprint

  ArXiv.org · 2025-09-01