Philippe Lemey

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Smoothly Time-Varying Continuous Time Markov Chains in Phylogenetics

  ArXiv.org · 2026-06-24

• Smoothly Time-Varying Continuous Time Markov Chains in PhylogeneticsPreprint

  arXiv (Cornell University) · 2026-06-24

• Better data, better trees: GenBank-GISAID deduplication and source-specific artifact masking in viral genomics

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-16

• Reconciling fast Hepatitis B evolutionary rates with ancient co-divergence

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-08

• ViMOP

  Zenodo (CERN European Organization for Nuclear Research) · 2026-04-22

• ViMOP

  Zenodo (CERN European Organization for Nuclear Research) · 2026-04-22

• Nosocomial Outbreak of Lassa Fever in Conakry, Guinea, 2022

  The Journal of Infectious Diseases · 2026-04-21 · 1 citations

• Joon-Klaps/ggphylogeo: Version 0.1.2

  Open MIND · 2026-02-06

• Joon-Klaps/ggphylogeo: Version 0.1.2

  Zenodo (CERN European Organization for Nuclear Research) · 2026-02-06

• Non-Linear Drivers of Population Dynamics: a Nonparametric Coalescent Approach

  arXiv (Cornell University) · 2026-02-05

• Non-Linear Drivers of Population Dynamics: a Nonparametric Coalescent ApproachPreprint

  Open MIND · 2026-02-05

• Unravelling the epidemiological and dispersal dynamics of the 2024-2025 chikungunya virus epidemic on Réunion island

  medRxiv · 2026-01-11

• Evolutionary history of Jamestown Canyon virus disentangles complex multi-vector ecology

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-01-10

• RNA virus genomes from centuries- to millennia-old Adélie penguin mummiesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-18

• Dengue serotypes and epidemic dynamics in Brazil: a spatiotemporal perspective

  Travel Medicine and Infectious Disease · 2025-12-18 · 1 citations

• Molecular epidemiology of HIV-1 in Hungary: an evolving contact zone of colliding virus subtypes

  Frontiers in Microbiology · 2025-12-16 · 1 citations

• Molecular epidemiology of HIV-1 in Hungary: an evolving contact zone of colliding virus subtypes

  Universität Zürich, ZORA · 2025-12-16

• Genomic evidence for co-evolution and sporadic host shifts in leishmaniavirusesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-20

• Phlorest phylogeny derived from Bouckaert et al. 2012 'Mapping the Origins and Expansion of the Indo-European Language Family'

  Zenodo (CERN European Organization for Nuclear Research) · 2025-11-11

• Modelling practices, data provisioning, sharing and dissemination needs for pandemic decision-making: a European survey-based modellers’ perspective, 2020 to 2022

  Eurosurveillance · 2025-10-23 · 1 citations