Rafael A. Irizarry

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Setting higher standards for reports of microbial species in human cancers.

  Apollo (University of Cambridge) · 2026-03-01

• An image-based transcriptomics atlas reveals the regional and microbiota-dependent molecular, cellular, and spatial structure of the murine gut

  Cell Host & Microbe · 2026-02-19 · 3 citations

• Setting higher standards for reports of microbial species in human cancers

  Nature Cancer · 2026-02-19 · 2 citations

• A New Family of Poisson Non-negative Matrix Factorization Methods Using the Shifted Log Link

  ArXiv.org · 2026-01-09

• A New Family of Poisson Non-negative Matrix Factorization Methods Using the Shifted Log LinkPreprint

  arXiv (Cornell University) · 2026-01-09

• Unique molecular identifiers don’t need to be unique: a collision-aware estimator for RNA-seq quantificationPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-12

• An image-based transcriptomics atlas reveals the regional and microbiota-dependent molecular, cellular, and spatial structure of the murine gutPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-07-24

• Abstract 5177: Modeling 6q deletion and MYD88L265P-driven B-cell lymphomas in mice reveals early lymphomagenesis mechanisms and identifies the putative cell of origin

  Cancer Research · 2025-04-21

• Identifying spatially variable genes by projecting to morphologically relevant curvesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-11-21 · 4 citations

• Baseline immune state and T-cell clonal kinetics are associated with durable response to CAR-T therapy in large B-cell lymphoma

  Blood · 2024-09-06 · 19 citations

• Robust identification of perturbed cell types in single-cell RNA-seq data

  Nature Communications · 2024-09-01 · 21 citations

• Data visualization principles

  2024-07-15

• Git and GitHub

  2024-07-15

• data.table

  2024-07-15

• Parsing dates and times

  2024-07-15

• Organizing with Unix

  2024-07-15

• Data visualization in practice

  2024-07-15

• Extracting data from the web

  2024-07-15

• Detection of allele-specific expression in spatial transcriptomics with spASE

  Genome biology · 2024-07-08 · 12 citations