Rita Casadio

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• On the state of protein function prediction: a report on the fourth CAFA challenge

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-11

• Embedding-Based Alignments Capture Structural and Sequence Domains of Distantly Related Multifunctional Human Proteins

  Computation · 2026-01-20

• Alpha&ESMhFolds: An Updated Web Server for the Comparison, Evaluation, and Annotation of Human AlphaFold2 and ESMFold Models

  Journal of Molecular Biology · 2026-01-01 · 1 citations

• Understanding the evolutionary dynamics of Monkeypox virus through less explored pathways

  Scientific Reports · 2025-07-16 · 3 citations

• A descriptor-free machine learning framework to improve antigen discovery for bacterial pathogens

  PLoS ONE · 2025-06-05

• Evaluation of the structural models of the human reference proteome: AlphaFold2 versus ESMFold

  Current Research in Structural Biology · 2025-05-22 · 4 citations

• Computational Resources for Molecular Biology 2025

  Journal of Molecular Biology · 2025-05-15

• Can Human Canonical Glutathione S-Transferases Act as RNA-Binding Proteins?

  Journal of Computational Biophysics and Chemistry · 2025-05-02

• Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A

  UNC Libraries · 2025-03-20

• Merging metabolomics and genomics provides a catalog of genetic factors that influence molecular phenotypes in pigs linking relevant metabolic pathways

  Genetics Selection Evolution · 2025-03-06 · 8 citations

• Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A

  Human Genetics · 2025-03-01 · 1 citations

• Critical assessment of missense variant effect predictors on disease-relevant variant data

  Human Genetics · 2025-03-01 · 21 citations

• Assessing the predicted impact of single amino acid substitutions in MAPK proteins for CAGI6 challenges

  Human Genetics · 2025-02-20

• Evaluating predictors of kinase activity of STK11 variants identified in primary human non-small cell lung cancers

  Human Genetics · 2025-02-11 · 1 citations

• CAGI6 ID panel challenge: assessment of phenotype and variant predictions in 415 children with neurodevelopmental disorders (NDDs)

  Human Genetics · 2025-01-09 · 2 citations

• Predicting the Pathogenicity of Human Protein Variants: Not Only a Matter of Residue Labeling

  Methods in molecular biology · 2025-01-01

• AlphaFold2 and ESMFold: A large-scale pairwise model comparison of human enzymes upon Pfam functional annotation

  Computational and Structural Biotechnology Journal · 2025-01-01 · 9 citations

• DDGemb: predicting protein stability change upon single- and multi-point variations with embeddings and deep learning

  Bioinformatics · 2024-12-26 · 14 citations

• Assessing the predicted impact of single amino acid substitutions in calmodulin for CAGI6 challenges

  Human Genetics · 2024-12-23

• Testing the Capability of Embedding-Based Alignments on the GST Superfamily Classification: The Role of Protein Length

  Molecules · 2024-09-29 · 4 citations