Ruiqing Zheng

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• scHLens: a web server for hierarchically and interactively exploring single cell RNA-seq data

  Briefings in Bioinformatics · 2025-11-01

• SpaNN: Spatial Transcriptomic Data Enhancement Using Deep Neural Network

  IEEE Transactions on Computational Biology and Bioinformatics · 2025-08-06

• ACE: A Versatile Contrastive Learning Framework for Single-cell Mosaic Integration

  Genomics Proteomics & Bioinformatics · 2025-08-01

• Contrastive Learning-Based Method for Single-Cell Multi-omics Data Clustering

  Lecture notes in computer science · 2025-07-31

• Leveraging protein language models for cross-variant CRISPR/Cas9 sgRNA activity prediction

  Bioinformatics · 2025-07-01 · 6 citations

• Integration of multi-omics data accelerates molecular analysis of common wheat traits

  Nature Communications · 2025-03-05 · 42 citations

• scMoMtF: An interpretable multitask learning framework for single-cell multi-omics data analysis

  PLoS Computational Biology · 2024-12-18 · 18 citations

• Mosaic integration of spatial multi-omics with SpaMosaicPreprint

  Research Square · 2024-12-12 · 1 citations

• ComLMEss: Combining multiple protein language models enables accurate essential protein prediction

  2024-12-03 · 2 citations

• Aligning Multimodal Biomedical Images and Language via One Large Vision-Language Model

  2024-12-03 · 1 citations

• scGDCC: Graph-based Dual Contrastive Calibration for Single Cell MultiOmics Clustering

  2024-12-03 · 3 citations

• DP-BERT: a pre-trained deep language model for depression prediction using microarray data

  2024-12-03

• CellCom: A web server for prediction, visualization, and evaluation of cell-cell communication mediated by ligand-receptor pairs

  2024-11-22