S. Cenk Şahinalp

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Genotyping of selected germline adaptive immune system loci using short-read sequencing data

  Genome Research · 2025-08-05 · 2 citations

• Abstract 3898: Integrating structural variants and single nucleotide variants to uncover evolutionary trajectories in melanoma

  Cancer Research · 2025-04-21

• Learning-augmented sketching offers improved performance for privacy preserving and secure GWAS

  iScience · 2025-02-13 · 1 citations

• A Partition Function Algorithm to Evaluate Inferred Subclonal Structures in Single-Cell Sequencing Data

  Lecture notes in computer science · 2025-01-01 · 1 citations

• Geny: a genotyping tool for allelic decomposition of killer cell immunoglobulin-like receptor genes

  Frontiers in Immunology · 2024-12-23 · 2 citations

• Stochastic modeling of single-cell gene expression adaptation reveals non-genomic contribution to evolution of tumor subclones

  Cell Systems · 2024-12-18 · 12 citations

• Biologically-informed killer cell immunoglobulin-like receptor gene annotation tool

  Bioinformatics · 2024-10-16 · 2 citations

• TX-Phase: Secure Phasing of Private Genomes in a Trusted Execution EnvironmentPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-09-20 · 1 citations

• Biologically-informed Killer cell immunoglobulin-like receptor (KIR) gene annotation toolPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-08-16 · 1 citations