Salem Malikić

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Additional file 1 of LCPan: efficient variation graph construction using locally consistent parsing

  Figshare · 2026-04-24

• Additional file 1 of LCPan: efficient variation graph construction using locally consistent parsing

  Figshare · 2026-04-24

• LCPan: efficient variation graph construction using locally consistent parsingPreprint

  Genome biology · 2026-04-24

• Abstract 6898: Identifying robust subclonal structures through tumor progression tree alignment.

  Cancer Research · 2026-04-03

• Abstract 6900: Wakhan: Reconstruction of chromosome-scale copy number profiles of tumor genomes with long-read sequencing.

  Cancer Research · 2026-04-03

• Abstract 6897: A bi-partition function algorithm to evaluate inferred subclonal structures in single-cell sequencing data.

  Cancer Research · 2026-04-03

• Abstract 6905: Reconstruction of Tumor Clonal Trees with Multi-Sample Bulk Sequencing Data by Integrative Combinatorial Optimization.

  Cancer Research · 2026-04-03

• Abstract 704: Full-range genomic analysis at single-cell resolution reveals genetic, epigenetic, and parallel evolution of melanoma subclones.

  Cancer Research · 2026-04-03

• Identifying Robust Subclonal Structures through Tumor Progression Tree Alignment

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-27

• GenCore: Genomic distance estimation using Locally Consistent Parsing

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-01-12

• Wakhan: reconstruction of chromosome-scale copy number profiles of tumor genomes with long-read sequencing

  medRxiv · 2025-12-15

• 71. Improved tumor profiling and diagnosis via long-read variant detection toolkit

  Cancer Genetics · 2025-12-01

• 72. Long-read sequencing of mouse melanoma subclones reveals multifaceted and parallel tumor progression

  Cancer Genetics · 2025-12-01

• Long-read sequencing of single cell-derived melanoma subclones reveals divergent and parallel genomic and epigenomic evolutionary trajectoriesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-02

• Abstract 2848: Severus: A tool for detecting and characterizing complex structural variants in cancer using long-read sequencing

  Cancer Research · 2025-04-21

• Abstract 7497: Nanopore sequencing of single-cell derived sublines provides insights into melanoma heterogeneity and evolution

  Cancer Research · 2025-04-21

• Abstract 3898: Integrating structural variants and single nucleotide variants to uncover evolutionary trajectories in melanoma

  Cancer Research · 2025-04-21

• Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

  Nature Biotechnology · 2025-04-04 · 24 citations

• A Partition Function Algorithm to Evaluate Inferred Subclonal Structures in Single-Cell Sequencing Data

  Lecture notes in computer science · 2025-01-01 · 1 citations

• Stochastic modeling of single-cell gene expression adaptation reveals non-genomic contribution to evolution of tumor subclones

  Cell Systems · 2024-12-18 · 12 citations