Samuel Chaffron

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Prokaryotic metagenomic datasets and associated plankton imaging resources from the Chilean margin: Mission Microbiomes CEODOS Chile

  Zenodo (CERN European Organization for Nuclear Research) · 2026-12-01

• Prokaryotic metagenomic datasets and associated plankton imaging resources from the Chilean margin: Mission Microbiomes CEODOS Chile

  Zenodo (CERN European Organization for Nuclear Research) · 2026-12-01

• Diatoms vs dinoflagellates: a temporal network analysis of bloom impacts on phytoplankton diversity and community structure in French coastal waters

  ISME Communications · 2026-06-17

• BlueRemediomics D1.7: Workflows to extract community context for a given microbe or metabolic function

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-17

• BlueRemediomics D1.7: Workflows to extract community context for a given microbe or metabolic function

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-17

• AtlantECO Deliverable - D02.3 - AtlantECO-BASE (version 2)

  Zenodo (CERN European Organization for Nuclear Research) · 2026-04-20

• AtlantECO Deliverable - D02.5 - AtlantECO-MAPS (version 2)

  Zenodo (CERN European Organization for Nuclear Research) · 2026-04-15

• AtlantECO Deliverable - D02.5 - AtlantECO-MAPS (version 2)

  Zenodo (CERN European Organization for Nuclear Research) · 2026-04-15

• Global maps of the Ocean microbiome (AtlantECO-MAPS)

  Zenodo (CERN European Organization for Nuclear Research) · 2026-02-19

• Global maps of the Ocean microbiome (AtlantECO-MAPS)

  Zenodo (CERN European Organization for Nuclear Research) · 2026-02-19

• Ground-truth Construction and Evaluation of LLM Contribution to Life Sciences Tool Annotation

  HAL (Le Centre pour la Communication Scientifique Directe) · 2026-01-01

• Co-occurrence is associated with horizontal gene transfer across marine bacteria independent of phylogeny

  The ISME Journal · 2025-12-10 · 1 citations

• MIMEco: Multi-objective metabolic modeling to predict and explain pairwise interactionsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-30

• Genomics-based quantitative biogeography of marine planktonPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-26

• The southern gap in ocean microbiome science

  Ocean Microbiology · 2025-10-17 · 3 citations

• Niche-partitioning of AEGEAN-169, an abundant and ubiquitous marine bacteria in the global ocean

  DIGITAL.CSIC (Spanish National Research Council (CSIC)) · 2025-09-01

• Ecological processes shaping marine microbial assemblages diverge between equatorial and temperate time-seriesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-25

• MicrobioRel: A Set of Datasets for Microbiome Relation ExtractionPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-03

• Diatoms vs dinoflagellates: a temporal network analysis of bloom impacts on diversity and phytoplankton community structure in French coastal watersPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-30

• Summarization for Generative Relation Extraction in the Microbiome DomainPreprint

  ArXiv.org · 2025-06-10