Shane Neph

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Single-molecule variation in telomeric sequence and structure across humans

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-05

• Long-read MitoScope reveals tissue-resolved somatic mitochondrial variation and landscape of nuclear-embedded mitochondrial sequences

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-15

• Genetic diversity and regulatory features of human-specific NOTCH2NL duplications

  Cell Genomics · 2026-03-30

• Haplotype-Resolved Genomics Reveals Conserved Chromatin Architecture and Epigenetic Constraints of Human Neocentromeres

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-25 · 2 citations

• CUT&TIME captures the history of open chromatin in developing neuronsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-31 · 1 citations

• Genetic diversity and regulatory features of human-specific <i>NOTCH2NL</i> duplicationsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-03-16 · 2 citations

• Centromeric transposable elements and epigenetic status drive karyotypic variation in the eastern hoolock gibbon

  Cell Genomics · 2025-03-14 · 10 citations

• Integrating Single-Molecule Sequencing and Deep Learning to Predict Haplotype-Specific 3D Chromatin Organization in a Mendelian ConditionPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-03-02 · 1 citations

• Centromeric transposable elements and epigenetic status drive karyotypic variation in the eastern hoolock gibbonPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-08-30