Full Professor(heuristic)

Bioinformatics and Genomic Networks · Molecular Biology

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h-index76
i10-index193
Publications365
Citations28,493

Grants

23 total · 5 active

NIH #U24DK141185

Metabolomics Workbench - National Metabolomics Data Repository

Active
Amount
$1M–$2M
Period
2024-09-202029-06-30
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #OT2OD036435

The CFDE Workbench

Active
Amount
$3M–$4M
Period
2023-09-182028-09-17
PIs
2

Awarded at ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI

NIH #R01HL130840

MicroRNA Control of Dilated Cardiomyopathy

Active
Amount
$600K–$700K
Period
2023-12-122027-11-30
PIs
2

Awarded at STANFORD UNIVERSITY

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All Grants

23 total · 5 active

NIH #U24DK141185

Metabolomics Workbench - National Metabolomics Data Repository

Active
Amount
$1M–$2M
Period
2024-09-202029-06-30
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #OT2OD036435

The CFDE Workbench

Active
Amount
$3M–$4M
Period
2023-09-182028-09-17
PIs
2

Awarded at ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI

NIH #R01HL130840

MicroRNA Control of Dilated Cardiomyopathy

Active
Amount
$600K–$700K
Period
2023-12-122027-11-30
PIs
2

Awarded at STANFORD UNIVERSITY

NIH #U24OD038425

"Defining the Human Metabotype" [Human metabolic status defined through genetic, diet,environmental exposure and exercise perturbations]

Active
Amount
$1M–$2M
Period
2024-09-172027-08-31
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #RF1AG084030

Nextgen AD Models, Endotypes, and Screening

Active
Amount
$2M–$3M
Period
2024-06-012027-05-31
PIs
2

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #T32GM139790

Graduate Training Program in Bioinformatics

Amount
$400K–$500K
Period
2021-07-012026-06-30
PIs
3

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #R01HL108735

Systems Biology Analyses for Hemodynamic Regulation of Vascular Homeostasis

Amount
$1M–$2M
Period
2012-08-242025-07-31
PIs
3

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #OT2OD030544

Biomedical Data Commons Workbench (BDCW)

Amount
$800K–$900K
Period
2020-09-232024-09-22
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NSF #1953298

CDS&E: Collaborative Research: CDS&E: Advances in closure modeling for turbulent flows with finite-sized particles informed by massive simulations on heterogeneous architectures

Amount
$200K–$300K
Period
2020-09-152024-08-31
PIs
1

Awarded at Iowa State University

NIH #R01LM012595

Reconstruction and Modeling of Dynamical Molecular Networks

Amount
$300K–$400K
Period
2018-08-062023-06-30
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #U19AI090023

System Biological Analyses of Innate and Adaptive Responses to Vaccination

Amount
$7M–$8M
Period
2020-07-132023-06-30
PIs
7

Awarded at EMORY UNIVERSITY

NSF #1905017

Collaborative Research: Bridging the gap between particle-scale thermal transport and device-scale predictions

Amount
$100K–$200K
Period
2019-06-012023-05-31
PIs
1

Awarded at Iowa State University

NIH #R01HL106579

Nucleolin Regulation of miRome by Shear Stress

Amount
$600K–$700K
Period
2011-01-012022-11-30
PIs
3

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #T32GM008806

Graduate Training Program in Bioinformatics

Amount
$600K–$700K
Period
2001-07-012022-06-30
PIs
3

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #R01DK109365

Mapping Disease Pathways for Biliary Atresia

Amount
$500K–$600K
Period
2017-04-012022-03-31
PIs
3

Awarded at UNIVERSITY OF PITTSBURGH AT PITTSBURGH

NSF #1336941

Predictive Computational Tools for Biomass Fast Pyrolysis in Fluidized Bed Reactors using Particle-Resolved Direct Numerical Simulation of Reacting Gas-Solid Flow

Amount
$200K–$300K
Period
2013-09-012018-08-31
PIs
2

Awarded at Iowa State University

NSF #1134500

Stability Limits for Gas-Solid Suspensions with Finite Fluid Inertia using Particle-Resolved Direct Numerical Simulations

Amount
$200K–$300K
Period
2011-09-012015-08-31
PIs
1

Awarded at Iowa State University

NSF #1034307

Multiphase Models for CO2 Cleanup: Heat and Mass Transfer in Fluid-Particle Suspensions through Direct Numerical Simulation and Laser-Based Measurements

Amount
$300K–$400K
Period
2010-09-012015-08-31
PIs
2

Awarded at Iowa State University

NSF #0835541

CDI-Type II: Hierarchiacal Modularity in Evolution and Function

Amount
$600K–$700K
Period
2008-10-012012-09-30
PIs
1

Awarded at University of California-San Diego

NSF #0641037

Biochemical Pathways Workbench

Amount
$600K–$700K
Period
2007-12-012011-11-30
PIs
1

Awarded at University of California-San Diego

NSF #0003231

Biology Workbench: A web-based infrastructure for databases, tools and interfaces in biology

Amount
$700K–$800K
Period
2000-08-152003-07-31
PIs
1

Awarded at University of California-San Diego

NSF #9604223

Computer Simulations of Molecular Recognition in Antibody- Protein Association

Amount
<$100K
Period
1997-05-151999-04-30
PIs
1

Awarded at University of Illinois at Urbana-Champaign

NIH #U2CDK119886

Admin-Core

Amount
$600K–$700K
Period
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

Recent Public Signals

  1. New preprint: Brain Organoids, Lessons from Fetal Neocortex Formation, and Rational Design for Quality Control2026-05-28
  2. New paper: Immunogenomic diversity of triple-negative breast cancers in obese and non-obese black and white women (npj Breast Cancer)2025-11-12
  3. New NIH award: Metabolomics Workbench - National Metabolomics Data Repository2024-09-20

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Data Freshness

  • Publications as of 2026-07-09
  • Grants as of 2026-08-26

Data may not be current

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ORCID: 0000-0002-8059-4659

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