Shuai Zeng

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• G2PDeep-v2: A Web-Based Deep-Learning Framework for Phenotype Prediction and Biomarker Discovery for All Organisms Using Multi-Omics Data

  Biomolecules · 2025-12-01 · 2 citations

• Applications of Large Language Models and Prompt Optimization for Knowledge Extraction From Biological Pathway Figures

  IEEE Journal of Biomedical and Health Informatics · 2025-11-13

• MULoc-target: Targeting peptide classification and detection using a protein language model

  Briefings in Bioinformatics · 2025-07-01 · 1 citations

• Maize nodal root growth maintenance during water deficit: metabolic acclimation and the role of increased solute deposition in osmotic adjustment

  Frontiers in Plant Science · 2025-06-09 · 2 citations

• Leveraging Large Language Models for Infectious Disease Surveillance—Using a Web Service for Monitoring COVID-19 Patterns From Self-Reporting Tweets: Content Analysis

  Journal of Medical Internet Research · 2025-01-16 · 4 citations

• G2PDeep-v2: a web-based deep-learning framework for phenotype prediction and biomarker discovery for all organisms using multi-omics dataPreprint

  Research Square · 2025-01-09

• Comprehensive Prediction of Protein Localization and Signal Peptides Using MULocDeep

  Methods in molecular biology · 2025-01-01

• Integrating Protein Language Model and Molecular Dynamics Simulations to Discover Antibiofouling Peptides

  Langmuir · 2024-12-30 · 3 citations

• S‐PLM: Structure‐Aware Protein Language Model via Contrastive Learning Between Sequence and Structure

  Advanced Science · 2024-12-12 · 30 citations

• G2PDeep-v2: a web-based deep-learning framework for phenotype prediction and biomarker discovery using multi-omics dataPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-09-13 · 2 citations

• Parameter-efficient fine-tuning on large protein language models improves signal peptide prediction

  Genome Research · 2024-07-26 · 28 citations

• NRIMD, a Web Server for Analyzing Protein Allosteric Interactions Based on Molecular Dynamics Simulation

  Journal of Chemical Information and Modeling · 2024-07-11 · 11 citations

• CrossMP: Enabling Cross-Modality Translation between Single-Cell RNA-Seq and Single-Cell ATAC-Seq through Web-Based Portal

  Genes · 2024-07-05