Shujun Ou

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• New tools crack repetitive cane

  Nature Plants · 2026-06-23

• The complete genome of a songbirdPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-14 · 3 citations

• TEtrimmer: a tool to automate the manual curation of transposable elements

  Nature Communications · 2025-09-25 · 10 citations

• PrinTE: A Forward Simulation Framework for Studying the Role of Transposable Elements in Genome Expansion and ContractionPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-06 · 1 citations

• Deciphering octoploid strawberry evolution with serial LTR similarity matrices for subgenome partition

  Horticulture Research · 2025-05-21 · 2 citations

• Solanum pan-genetics reveals paralogues as contingencies in crop engineering

  Nature · 2025-03-05 · 63 citations

• PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based PangenomesPreprint

  Research Square · 2025-02-05 · 2 citations

• The Complete Genome of a SongbirdPreprint

  SSRN Electronic Journal · 2025-01-01

• Referee report. For: The genome sequence of the Woodland strawberry, Fragaria vesca L. (Rosales: Rosaceae) [version 1; peer review: 1 approved]

  Faculty of 1000 Research Ltd · 2025-01-01

• Gapless assembly of complete human and plant chromosomes using only nanopore sequencing

  Genome Research · 2024-11-01 · 34 citations

• Accelerating de novo SINE annotation in plant and animal genomes

  Mobile DNA · 2024-10-19 · 1 citations

• Solanum pan-genomics and pan-genetics reveal paralogs as contingencies in crop engineeringPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-09-14 · 3 citations

• Four Strategies for Whole-Genome Annotation of Transposable Elements and Repeats in Maize

  Cold Spring Harbor Protocols · 2024-09-05 · 3 citations

• Navigating the Maze of Maize Genomics: The Impact of Transposable Elements and Tandem Repeats

  Cold Spring Harbor Protocols · 2024-09-05 · 2 citations

• Differences in activity and stability drive transposable element variation in tropical and temperate maize

  Genome Research · 2024-08-01 · 44 citations

• Deciphering octoploid strawberry evolution with serial LTR similarity matrices for subgenome partitionPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2024-08-01 · 2 citations