Simon Tavaré

Columbia University Irving Medical Center

Full Professor(heuristic)

Esophageal Cancer Research and Treatment · Surgery

h-index98

i10-index247

Publications527

Citations56,517

Grants

9 total · 0 active

NIH #5P50HG002790-10

Genomic Analysis of the genotype-phenotype map

Amount: $2.3M
Period: 2003-09-30 → 2015-08-31
PIs: 1
Est. capacity / PI: ~0 students

Awarded at UNIVERSITY OF SOUTHERN CALIFORNIA

NIH #5P50HG002790-09

Genomic Analysis of the genotype-phenotype map

Amount: $2.4M
Period: 2003-09-30 → 2014-08-31
PIs: 1
Est. capacity / PI: ~0 students

Awarded at UNIVERSITY OF SOUTHERN CALIFORNIA

NIH #5P50HG002790-08

Genomic Analysis of the genotype-phenotype map

Amount: $2.4M
Period: 2003-09-30 → 2014-08-31
PIs: 1
Est. capacity / PI: ~0 students

Awarded at UNIVERSITY OF SOUTHERN CALIFORNIA

Student capacity is a rough estimate from remaining award size, split equally among PIs. Actual funding decisions vary.

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

Potential Collaborators

Recent Publications

Last 2 years · showing 20 of 32

Accurate detection of tumor clonality and ongoing expansion mode from genomic data
bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-19
Single-nucleus multiome sequencing identifies candidate regulators of mouse gastric epithelial homeostasis
bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-27
Supplementary Figures from Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
2025-12-11
Supplementary Table S1 from Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
2025-12-11
Supplementary Table S4 from Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
2025-12-11
Supplementary Table S2 from Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
2025-12-11
Supplementary Table S6 from Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
2025-12-11
Supplementary Table S3 from Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
2025-12-11
Supplementary Table S5 from Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
2025-12-11
Approximate Bayesian computation sequential Monte Carlo via random forests
Statistics and Computing · 2025-10-23 · 3 citations
Ongoing genome doubling shapes evolvability and immunity in ovarian cancer
Nature · 2025-07-16 · 36 citations
CINner: Modeling and simulation of chromosomal instability in cancer at single-cell resolution
PLoS Computational Biology · 2025-04-03 · 8 citations
Birth and death processes in phylogenetics and population genetics
Philosophical Transactions of the Royal Society B Biological Sciences · 2025-02-13 · 3 citations
Consortium Author List from Cancer Research in the Age of Spatial Omics: Lessons from IMAXTPreprint
2025-01-17
Consortium Author List from Cancer Research in the Age of Spatial Omics: Lessons from IMAXTPreprint
2025-01-13
Cancer Research in the Age of Spatial Omics: Lessons from IMAXT
Cancer Discovery · 2025-01-13 · 4 citations
Data from Cancer Research in the Age of Spatial Omics: Lessons from IMAXTPreprint
2025-01-13
Supplementary Table S2 from Single-cell RNA sequencing unifies developmental programs of Esophageal and Gastric Intestinal Metaplasia.
2024-09-16
Supplementary Table S5 from Single-cell RNA sequencing unifies developmental programs of Esophageal and Gastric Intestinal Metaplasia.
2024-09-16
Supplementary Table S1 from Single-cell RNA sequencing unifies developmental programs of Esophageal and Gastric Intestinal Metaplasia.
2024-09-16

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Simon Tavaré

Grants

Genomic Analysis of the genotype-phenotype map

Genomic Analysis of the genotype-phenotype map

Genomic Analysis of the genotype-phenotype map

All Grants

Genomic Analysis of the genotype-phenotype map

Genomic Analysis of the genotype-phenotype map

Genomic Analysis of the genotype-phenotype map

Genomic Analysis of the genotype-phenotype map

Genomic Analysis of the genotype-phenotype map

Computational Methods for Functional Genomics

Computational Methods for Functional Genomics

Computational Methods for Functional Genomics

Computational Methods for Functional Genomics

Career Trajectory

Research Cluster Map

Potential Collaborators

Recent Publications