Stephen R. Quake

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Survival Benefits Outweigh Germline Competition Costs in Kin Chimeras

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-23

• Universal Cell Embeddings provides a Foundation Model for Cell Biology

  Zenodo (CERN European Organization for Nuclear Research) · 2026-04-01

• Universal Cell Embeddings provides a Foundation Model for Cell Biology

  Zenodo (CERN European Organization for Nuclear Research) · 2026-04-01

• Cell type inference in cell-free nucleic acid liquid biopsy

  Nature Biotechnology · 2025-11-26 · 2 citations

• CRATER tumor niches facilitate CD8+ T cell engagement and correspond with immunotherapy success

  Cell · 2025-10-17 · 8 citations

• Scalable single-cell total RNA-seq reveals non-coding programs in immunity, infection, and brain developmentPreprint

  Research Square · 2025-09-08 · 1 citations

• 2245P Evaluation of a cell-free DNA (cfDNA)-based blood test for early detection of pancreatic cancer in high-risk individuals with family history and genetic predisposition

  Annals of Oncology · 2025-09-01

• 1745P Validation of an epigenomic-based multicancer detection test

  Annals of Oncology · 2025-09-01

• Beyond polyA: scalable single-cell total RNA-seq unifies coding and non-coding transcriptomicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-10 · 2 citations

• Author Correction: Persistent transcriptional programmes are associated with remote memory

  Nature · 2025-08-06 · 1 citations

• An inflatable “finger-lock” for stabilizing nailfold capillary videos and modulating blood flow velocities

  Review of Scientific Instruments · 2025-08-01

• Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs

  Systematic and Applied Microbiology · 2025-07-29 · 3 citations

• Alternative splicing of latrophilin-3 controls synapse formation

  UNC Libraries · 2025-07-25

• Transcriptome profiling of cerebrospinal fluid in Alzheimer's disease reveals molecular dysregulations associated with disease

  Alzheimer s & Dementia Translational Research & Clinical Interventions · 2025-07-01 · 3 citations

• Cell-free RNA reveals host and microbial correlates of broadly neutralizing antibody development against HIVPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-14

• Reply to: False positives in study of memory-related gene expression

  Nature · 2025-06-04 · 3 citations

• Illuminating the uncharacterized regulatory genome of <i>E. coli</i> with massively parallel reportersPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-05-15

• Pioneering the future of biomedical innovation: Voices and reflections on the third annual Terasaki Innovation Summit 2025

  Cell Biomaterials · 2025-05-01

• A Cross-Species Generative Cell Atlas Across 1.5 Billion Years of Evolution: The TranscriptFormer Single-cell ModelPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-29 · 27 citations

• Molecular subtyping of hypertensive disorders of pregnancy

  Nature Communications · 2025-04-08 · 23 citations