Thomas Brettin

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• BioAlchemy: Distilling Biological Literature into Reasoning-Ready Reinforcement Learning Training Data

  arXiv (Cornell University) · 2026-04-03

• BioAlchemy: Distilling Biological Literature into Reasoning-Ready Reinforcement Learning Training DataPreprint

  arXiv (Cornell University) · 2026-04-03

• Interpretable transcriptome-to-phenotype modeling of cell-painting nuclear morphology features from RNA-seq under low-dose radiation exposure

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-23

• PRISM: Protocol Refinement through Intelligent Simulation ModelingPreprint

  arXiv (Cornell University) · 2026-01-08

• PRISM: Protocol Refinement through Intelligent Simulation Modeling

  ArXiv.org · 2026-01-08

• Malicious Attack Challenges and Mitigation Strategies for Large Code Models: A Survey on Data Poisoning, Adversarial Attacks, and Backdoor Vulnerabilities

  Proceedings of the ... Annual Hawaii International Conference on System Sciences/Proceedings of the Annual Hawaii International Conference on System Sciences · 2026-01-01

• Malicious Attack Challenges and Mitigation Strategies for Large Code Models: A Survey on Data Poisoning, Adversarial Attacks, and Backdoor Vulnerabilities

  ScholarSpace (University of Hawaii at Manoa) · 2025-12-23

• BV-BRC: a unified bacterial and viral bioinformatics resource with expanded functionality and AI integration

  Nucleic Acids Research · 2025-11-18 · 7 citations

• A Workflow for Error Analysis for Drug Response Prediction via Statistical Standardization and Distribution Analysis

  2025-11-07

• BioR5: A Three-Layer Architecture for Biological Reasoning in Scientific AI

  2025-11-07 · 2 citations

• Large Language Model (LLM)-Driven Document Clustering: Improving Real-Time Security Intelligence Extraction and Threat Analysis

  2025-07-12

• HiPerRAG: High-Performance Retrieval Augmented Generation for Scientific Insights

  2025-06-16 · 7 citations

• Abstract 1047: Addressing data disparity in pre-clinical research using a generative approach

  Cancer Research · 2025-04-21

• BrainXcan identifies brain features associated with behavioral and psychiatric traits using large-scale genetic and imaging data

  Developmental Cognitive Neuroscience · 2025-03-12 · 7 citations

• Data imbalance in drug response prediction: multi-objective optimization approach in deep learning setting

  Briefings in Bioinformatics · 2025-03-01 · 3 citations

• 15 (PB003): The IMPROVE framework for automating and standardizing tumor drug response prediction modeling

  European Journal of Cancer · 2024-10-01 · 1 citations

• 193 (PB181): Preparing for Cancer Foundational models: a study of how LLMs perform in cancer applications

  European Journal of Cancer · 2024-10-01

• Binding Affinity Prediction: From Conventional to Machine Learning-Based ApproachesPreprint

  arXiv (Cornell University) · 2024-09-30 · 2 citations

• Assessing Reusability of Deep Learning-Based Monotherapy Drug Response Prediction Models Trained with Omics DataPreprint

  arXiv (Cornell University) · 2024-09-18

• Impact of Molecular Representations on Deep Learning Model Comparisons in Drug Response PredictionsPreprint

  ChemRxiv · 2024-09-02 · 1 citations