Timothy P. L. Smith

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• A chromosome level reference genome for the pecan weevil, Curculio caryae

  Scientific Data · 2026-03-18

• Identification of cis-regulatory elements provides insights into tissue-specific gene regulation in the sheep genome

  Nature Communications · 2026-03-16

• Phased-assembly-driven pangenome graphs for structural variant genotyping and complex trait mapping in dairy cattle

  Nature Communications · 2026-01-30

• Population structure and domestication history of the Javan banteng

  Current Biology · 2026-01-01

• Insights into natural neocentromere evolution from a cattle T2T X chromosome

  Nature Communications · 2025-11-28 · 2 citations

• Immunogenomics Approaches to Studying Antibody Repertoires and Vaccine Responses in Ruminants

  Annual Review of Animal Biosciences · 2025-11-21

• An integrated multi-tissue atlas of epigenomic landscapes and regulatory elements in the bovine genomePreprint

  Research Square · 2025-10-30

• Bighorn sheep T2T genome assembly reveals differences in immune genes: a potential cause of high morbidity due to respiratory pathogensPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-02 · 1 citations

• Finishing a complete giraffe genome from telomere to telomere with Verkko-FilletPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-02 · 1 citations

• The genetic diversity of Indonesian cattle has been shaped by multiple introductions and adaptive introgression

  Nature Communications · 2025-09-25 · 2 citations

• An integrated multi-tissue atlas of epigenomic landscapes and regulatory elements in the bovine genomePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-25 · 2 citations

• Phase variation in <i>Mannheimia haemolytica</i> challenges the static genome paradigm

  Microbiology Spectrum · 2025-07-23 · 1 citations

• Long read and preliminary pangenome analyses reveal breed-specific structural variations and novel sequences in Holstein and Jersey cattle

  Journal of Advanced Research · 2025-04-19 · 7 citations

• Cattle T2T X Chromosome: Insights into Natural Neocentromere EvolutionPreprint

  Research Square · 2025-04-08 · 2 citations

• Population structure and domestication history of the Javan banteng ( <i>Bos javanicus javanicus</i> )Preprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-04-04

• Referee report. For: The genome sequence of the false flower beetle, Anaspis frontalis (Linnaeus, 1758) [version 1; peer review: 2 approved]

  Faculty of 1000 Research Ltd · 2025-01-01

• Bighorn Sheep T2T Genome Assembly Reveals Differences in Immune Genes: A Potential Cause of High Morbidity Due to Respiratory PathogensPreprint

  SSRN Electronic Journal · 2025-01-01 · 1 citations

• Most Beefalo cattle have no detectable bison genetic ancestryPreprint

  eLife · 2024-12-04

• Most Beefalo cattle have no detectable bison genetic ancestryPreprint

  eLife · 2024-12-04 · 3 citations

• Telomere-to-telomere assemblies of cattle and sheep Y-chromosomes uncover divergent structure and gene content

  Nature Communications · 2024-09-27 · 28 citations