Todd J. Treangen

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Kente: A Graph-based Pangenomic Approach for Horizontal Gene Transfer Detection in Microbiomes

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-26

• Min-frame transformation enables more sensitive viral genome alignment

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-05-22

• AutoCSF: Provably Space-Efficient Indexing of Skewed Key-Value Workloads via Filter-Augmented Compressed Static Functions

  ArXiv.org · 2026-03-25

• AutoCSF: Provably Space-Efficient Indexing of Skewed Key-Value Workloads via Filter-Augmented Compressed Static FunctionsPreprint

  arXiv (Cornell University) · 2026-03-25

• Antibiotic-induced gut microbiome remodeling reduces neuroinflammation in traumatic brain injury

  Communications Biology · 2026-02-25 · 4 citations

• Tracking <i>Candida auris</i> in Communities via Wastewater: Facility-Level Surveillance and Targeted Sequencing

  medRxiv · 2026-02-02

• Ultra-high-throughput mapping of genetic design space

  Nature · 2026-01-14 · 6 citations

• Inter-tool Analysis of a NIST Dataset for Assessing Baseline Nucleic Acid Sequence Screening

  Applied Biosafety · 2025-12-26 · 2 citations

• bronko: ultrafast, alignment-free detection of viral genome variation

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-02

• Seqwin: Ultrafast identification of signature sequences in microbial genomesPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-09

• Sixth Annual BCM Hackathon on Structural Variation and Pangenomics

  F1000Research · 2025-11-07 · 1 citations

• Strainify: Strain-Level Microbiome Profiling for Low-Coverage Short-Read Metagenomic DatasetsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-13 · 1 citations

• Reference-guided assembly of metagenomes with MetaCompass

  Cell Reports Methods · 2025-09-27 · 4 citations

• Gut microbiome remodeling by antibiotics reduces neuroinflammation in traumatic brain injuryPreprint

  Research Square · 2025-09-18

• Sensitivity, Throughput, and Cost Analysis of Concentration Methods for Multitarget Pathogen Wastewater Monitoring

  ACS ES&T Water · 2025-09-04 · 4 citations

• tMHG-Finder: Tree-Guided Maximal Homologous Group Finder for Bacterial Genomes

  Lecture notes in computer science · 2025-08-31

• Impact of Ventilation on Respiratory Virus Transmission in College Residence Hall Cohorts: Potential for Causal Inference About Mode of Transmission

  Influenza and Other Respiratory Viruses · 2025-07-01 · 1 citations

• A class of benzofuranoindoline-bearing heptacyclic fungal RiPPs with anticancer activities

  Nature Chemical Biology · 2025-06-23 · 10 citations

• A survey of computational approaches for characterizing microbial interactions in microbial mats

  Genome biology · 2025-06-16 · 1 citations

• Inter-tool analysis of a NIST dataset for assessing baseline nucleic acid sequence screeningPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-01 · 4 citations