Trey Ideker

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Figure S2 from HBV Remodels PP2A Complexes to Rewire Kinase Signaling in Hepatocellular Carcinoma

  2026-06-17

• Figure S1 from HBV Remodels PP2A Complexes to Rewire Kinase Signaling in Hepatocellular Carcinoma

  2026-06-17

• Figure S3 from HBV Remodels PP2A Complexes to Rewire Kinase Signaling in Hepatocellular Carcinoma

  2026-06-17

• Figure S4 from HBV Remodels PP2A Complexes to Rewire Kinase Signaling in Hepatocellular Carcinoma

  2026-06-17

• Pharmacogenomics Drug Response Profiles

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-09

• HyperMap: An Efficient Framework for Transferring Perturbation Responses Across Diverse Biological Contexts

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-27

• G2PT: a genotype-phenotype transformer to assess and explain polygenic risk

  Open MIND · 2026-04-23

• G2PT: a genotype-phenotype transformer to assess and explain polygenic risk

  Zenodo (CERN European Organization for Nuclear Research) · 2026-04-23

• Abstract 5936: Massively parallel installation and evaluation of cancer coding mutations

  Cancer Research · 2026-04-03

• Network divergence analysis identifies adaptive gene modules and two orthogonal vulnerability axes in pancreatic cancer

  Molecular Oncology · 2026-03-01

• CellMaster: Collaborative Cell Type Annotation in Single-Cell Analysis

  arXiv (Cornell University) · 2026-02-12

• CellMaster: Collaborative Cell Type Annotation in Single-Cell AnalysisPreprint

  Open MIND · 2026-02-12

• scLong: a billion-parameter foundation model for capturing long-range gene context in single-cell transcriptomics

  Nature Communications · 2026-02-05 · 3 citations

• Prenatal Life is the Predominant Source of Somatic Mosaicism Across Tissues and AgingPreprint

  Research Square · 2026-02-04

• Author Reply to Peer Reviews of A genotype-phenotype transformer to assess and explain polygenic risk

  2026-01-16

• The ADAPT learning cancer treatment system: ARPA-H’s initiative to revolutionize cancer therapy

  Cancer Cell · 2026-01-08 · 1 citations

• Pharmacogenomics Drug Response Profiles

  Open MIND · 2026-01-02

• Full Pharmacogenomics Drug Response Profiles

  Zenodo (CERN European Organization for Nuclear Research) · 2025-12-19

• Full Pharmacogenomics Drug Response Profiles

  Zenodo (CERN European Organization for Nuclear Research) · 2025-12-19

• Supplementary Video 4 from GABA Regulates Electrical Activity and Tumor Initiation in Melanoma

  2025-12-12