Full Professor(heuristic)

Cancer Genomics and Diagnostics · Cancer Research

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h-index81
i10-index207
Publications403
Citations60,113

Grants

13 total · 3 active

NIH #U24CA264379

Software and algorithms for elucidating the structure, function, and evolution of extrachromosomal DNA

Expiring Soon
Amount
$700K–$800K
Period
2021-09-01 → 2026-08-31
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #R01GM114362

Computational methods for detecting patterns of complex genomic variation

Active
Amount
$300K–$400K
Period
2016-01-01 → 2028-07-31
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #P01HD104436

Core C- Bioinformatics Core

Active
Amount
$200K–$300K
Period
2020-12-01 → 2026-11-30
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

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All Grants

13 total · 3 active

NIH #U24CA264379

Software and algorithms for elucidating the structure, function, and evolution of extrachromosomal DNA

Expiring Soon
Amount
$700K–$800K
Period
2021-09-01 → 2026-08-31
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #R01GM114362

Computational methods for detecting patterns of complex genomic variation

Active
Amount
$300K–$400K
Period
2016-01-01 → 2028-07-31
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #P01HD104436

Core C- Bioinformatics Core

Active
Amount
$200K–$300K
Period
2020-12-01 → 2026-11-30
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #T32GM139790

Graduate Training Program in Bioinformatics

Amount
$400K–$500K
Period
2021-07-01 → 2026-06-30
PIs
3

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #OT2CA278635

eDyNAmiC - UCSD

Amount
$300K–$400K
Period
2025-06-01 → 2026-05-31
PIs
1

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #T32GM008806

Graduate Training Program in Bioinformatics

Amount
$600K–$700K
Period
2001-07-01 → 2022-06-30
PIs
3

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #R01HG010149

Refining Mendelian disease analysis via detection of clinically relevant repeat variants

Amount
$500K–$600K
Period
2018-09-14 → 2022-06-30
PIs
3

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NIH #P41GM103484

Center for Computational Mass Spectrometry

Amount
$1M–$2M
Period
2008-09-20 → 2021-06-30
PIs
3

Awarded at UNIVERSITY OF CALIFORNIA, SAN DIEGO

NSF #1458557

Collaborative Research: ABI Innovation: Computational population-genetic analysis for detection of soft selective sweeps

Amount
$600K–$700K
Period
2015-08-01 → 2020-07-31
PIs
1

Awarded at University of California-San Diego

NSF #1318386

III: Small: Algorithms for decoding complex patterns of genomic variation

Amount
$500K–$600K
Period
2013-09-01 → 2017-08-31
PIs
1

Awarded at University of California-San Diego

NSF #1115206

AF: Small: Algorithms for Genetics: Epistatic Interactions, Haplotype Assembly, and Selection Signatures

Amount
$400K–$500K
Period
2011-10-01 → 2015-09-30
PIs
2

Awarded at University of California-San Diego

NSF #0810905

III-CXT-Small: Algorithmic strategies for genotype-phenotype correlations

Amount
$400K–$500K
Period
2008-09-01 → 2012-08-31
PIs
1

Awarded at University of California-San Diego

NSF #0516440

Novel Algorithms for NcRNA Discovery and RNA Structure Prediction

Amount
—
Period
2005-08-01 → 2009-07-31
PIs
1

Awarded at University of California-San Diego

Recent Public Signals

  1. New paper: Detecting and reconstructing breakage-fusion-bridge cycles from long-read sequencing using BFBArchitect (Bioinformatics)2026-07-01
  2. New preprint: SPrUCE: Utilizing Ultraconserved Elements of DNA for Population-Level Genetic Diversity Estimation2025-11-16
  3. New NIH award: Software and algorithms for elucidating the structure, function, and evolution of extrachromosomal DNA2021-09-01

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Data Freshness

  • Publications as of 2026-07-09
  • Grants as of 2026-08-26

Data may not be current

Find elsewhere

Institution / lab homepage Search on ResearchGate

ORCID: 0000-0002-5810-6241

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