William P. Hanage

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Trust as a Hidden Driver of Epidemic Dynamics: A Missing Parameter in Compartmental Disease Transmission Models

  medRxiv · 2026-06-24

• Epidemiologic Moderators of the Effectiveness of Routine Screening for LAIs in High-Biosafety Environments

  medRxiv · 2026-04-06

• Modeling the effects of routine screening for accidental lab-acquired infections on the risk of potential pandemic pathogen escape from high-biosafety research facilities

  Frontiers in Bioengineering and Biotechnology · 2026-03-30

• SARS-CoV-2 Intra-host Variation Shows Evidence of Transmission and Convergent Evolution in a University Surveillance Cohort

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-15

• A 15-year Single-center Analysis of Late-onset Group B <i>Streptococcus</i> Infection Correlating Clinical Severity With Pathogen Virulence Determinants

  Clinical Infectious Diseases · 2025-11-25

• Migration-linked tuberculosis epidemics: how the future of tuberculosis in high-income countries will depend on the success or failure of TB control in high-burden settingsPreprint

  medRxiv · 2025-11-17

• The Potential Effect of Ending CDC Funding for HIV Tests: A Modeling Study in 18 StatesPreprint

  medRxiv · 2025-09-21 · 1 citations

• Neighbour Typing Using Long Read Sequencing Provides Rapid Prediction of Sequence Type and Antimicrobial Susceptibility of <i>Klebsiella pneumoniae</i>Preprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-09

• Bronze Age Yersinia pestis genome from sheep sheds light on hosts and evolution of a prehistoric plague lineage

  Cell · 2025-08-11 · 11 citations

• Characterisation of a persistent SARS-CoV-2 infection lasting more than 750 days in a person living with HIV: a genomic analysis

  The Lancet Microbe · 2025-07-21 · 6 citations

• Political determinants of US states’ screening-amenable cancer stage at diagnosis and premature cancer mortality

  JNCI Cancer Spectrum · 2025-07-14 · 3 citations

• Linkage-based ortholog refinement in bacterial pangenomes with CLARC

  Nucleic Acids Research · 2025-06-18 · 1 citations

• Modeling the Effects of Routine Screening for Accidental Lab-Acquired Infections on the Risk of Potential Pandemic Pathogen Escape from High-Biosafety Research FacilitiesPreprint

  medRxiv · 2025-05-18

• Advancing health equity in wastewater-based epidemiology: A global critical review and conceptual framework

  SSM - Population Health · 2025-03-19 · 3 citations

• Founder effects arising from gathering dynamics systematically bias emerging pathogen surveillancePreprint

  eLife · 2025-03-12

• Founder effects arising from gathering dynamics systematically bias emerging pathogen surveillancePreprint

  eLife · 2025-03-12 · 1 citations

• Author response: Founder effects arising from gathering dynamics systematically bias emerging pathogen surveillance

  2025-03-12

• Seasonal forcing and waning immunity drive the sub-annual periodicity of the COVID-19 epidemicPreprint

  medRxiv · 2025-03-06 · 3 citations

• Bronze Age <i>Yersinia pestis</i> genome from sheep sheds light on hosts and evolution of a prehistoric plague lineagePreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-02-07 · 3 citations

• P-397. Rapid Prediction of Genetic Relatedness of <i>Escherichia coli</i> Direct from Critical Care Samples Using Metagenomic Sequencing Paired with Neighbour Typing

  Open Forum Infectious Diseases · 2025-01-29