Xiaojie Qiu

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Generative Modeling of Mouse Embryogenesis for Fate and Disease Prediction

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-24

• Code for 4D Spatiotemporal Multiomic Analyses Reveal Morphogenetic Mechanisms Forming the Early Mammalian Heart

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-17

• Code for 4D Spatiotemporal Multiomic Analyses Reveal Morphogenetic Mechanisms Forming the Early Mammalian Heart

  Zenodo (CERN European Organization for Nuclear Research) · 2026-06-17

• Code for 4D Spatiotemporal Multiomic Analyses Reveal Morphogenetic Mechanisms Forming the Early Mammalian Heart

  Zenodo (CERN European Organization for Nuclear Research) · 2026-05-28

• U-Probe: Data and probe sequences for universal agentic probe design validation

  Open MIND · 2026-04-28

• U-Probe: Data and probe sequences for universal agentic probe design validation

  Zenodo (CERN European Organization for Nuclear Research) · 2026-04-28

• Universal agentic probe design for imaging-based spatial-omics

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-04-15

• Towards predictive virtual embryos with genomics and AI

  Nature Methods · 2026-03-26 · 1 citations

• Subcellular transcriptome sequencing with single cell APEX-seq identifies regulators of cell-cell interactions

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-03-18

• The chromosome-level genome assembly of Dryopteris fragrans reveals transposon-mediated genome evolution and adaptationPreprint

  Research Square · 2026-03-03

• PantheonOS: An Evolvable Multi-Agent Framework for Automatic Genomics Discovery

  bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-27 · 1 citations

• Predictive Modeling of Single Cell Transcriptomic Dynamics

  Stanford Digital Repository · 2026-01-21

• A stem cell knockout village reveals lineage rewiring and a non-canonical islet cell fate in monogenic diabetes

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-25 · 3 citations

• Revealing the antibiotic resistome in the global hadal trenches by large-scale cultivation and metagenomicsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-12-11

• MERFISH+, a large-scale, multi-omics spatial technology resolves the molecular holograms of the 3D human developing heartPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-11-04 · 4 citations

• Geometric Generative Modeling with Noise-Conditioned Graph NetworksPreprint

  ArXiv.org · 2025-07-12

• Spatiotemporal modeling of molecular holograms

  Cell · 2025-03-01 · 5 citations

• MorPhiC Consortium: towards functional characterization of all human genes

  Nature · 2025-02-12 · 13 citations

• Toward a privacy-preserving predictive foundation model of single-cell transcriptomics with federated learning and tabular modelingPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-01-06 · 9 citations

• Molecular convergence of risk variants for congenital heart defects leveraging a regulatory map of the human fetal heartPreprint

  medRxiv · 2024-11-21 · 11 citations