Yun S. Song

Career Trajectory

Research Cluster Map

Direct collaborators. Node size = influence, colour = community, dashed = past collaboration.

• Separating selection from mutation in antibody language models

  eLife · 2026-01-05 · 1 citations

• Separating selection from mutation in antibody language models

  eLife · 2026-01-05

• Nucleotide context models outperform protein language models for predicting antibody affinity maturation

  PLoS Computational Biology · 2025-12-01 · 1 citations

• A general framework for branch length estimation in Ancestral Recombination Graphs

  Proceedings of the National Academy of Sciences · 2025-11-25 · 1 citations

• Moronic acid alleviates non-alcoholic fatty liver disease and fibrosis through PPARs-mediated lipidomic reprogramming

  Phytomedicine · 2025-11-07 · 4 citations

• Inference of germinal center evolutionary dynamics via simulation-based deep learning

  eLife · 2025-11-03

• Inference of germinal center evolutionary dynamics via simulation-based deep learning

  eLife · 2025-11-03

• Separating selection from mutation in antibody language modelsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-10-22

• Author Correction: Robust and accurate Bayesian inference of genome-wide genealogies for hundreds of genomes

  Nature Genetics · 2025-10-10

• Predicting functional constraints across evolutionary timescales with phylogeny-informed genomic language modelsPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-21 · 5 citations

• Robust and adaptive non-parametric tests for detecting general distributional shifts in gene expression

  Cell Reports Methods · 2025-09-01

• Robust and accurate Bayesian inference of genome-wide genealogies for hundreds of genomes

  Nature Genetics · 2025-09-01 · 16 citations

• Inference of germinal center evolutionary dynamics via simulation-based deep learningPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-08-15

• Learning antibody sequence constraints from allelic inclusion

  Cell Systems · 2025-08-13 · 1 citations

• ConvexML: Fast and Accurate Branch Length Estimation under Irreversible Mutation Models, Illustrated through Applications to CRISPR/Cas9-Based Lineage Tracing

  Systematic Biology · 2025-08-08 · 5 citations

• A Sitewise Model of Natural Selection on Individual Antibodies via a Transformer–Encoder

  Molecular Biology and Evolution · 2025-07-30 · 7 citations

• Construction of knowledge graph for gas polyethylene pipelines based on ALBERT-BiGRU-CRF

  Scientific Reports · 2025-07-10 · 5 citations

• Ready Jurist One: Benchmarking Language Agents for Legal Intelligence in Dynamic EnvironmentsPreprint

  ArXiv.org · 2025-07-05

• Future directions in prognostic modeling for dengue-induced severe hepatitis

  World Journal of Hepatology · 2025-06-25

• Nucleotide context models outperform protein language models for predicting antibody affinity maturationPreprint

  bioRxiv (Cold Spring Harbor Laboratory) · 2025-06-18 · 7 citations